Organisers: Adam Eggebrecht, Emma Speh, Ari Segel
Duration: 4 hours
Summary: This course will teach modeling and processing approaches for using diffuse optical methods for mapping brain function in humans. This includes temporal data processing, data-anatomy registration and modeling, and image reconstruction using the NeuroDOT software package. This course will use a combination of instructor lecturing and hands-on exercises using publicly available high-fidelity data to teach both conceptual and practical aspects of fNIRS
imaging using the NeuroDOT software package and Optical-imaging XNAT-enabled Informatics (OXI). Attendees will learn and develop skills using NeuroDOT pipelines including data pre-processing, anatomical light modeling, and image reconstruction. All the training will be centered upon providing knowledge, training and tools for volumetric imaging of functional brain activations based on contrasts of hemoglobin concentration as measured using fNIRS data. The class will review the basic physics and biology of the approach, step through how the software works locally and on the cloud, and train attendees to use the software through exercises. More information about NeuroDOT is available at
https://www.nitrc.org/projects/neurodot.
Participant requirements: participants should bring a laptop and have some familiarity with MATLAB